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CBMI Related Publications - Michael Becich Real-time PUB-MED lookup: 38 Results Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs.Bernstam EV, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Eichmann D, Athey BD, Scheuermann RH, Anderson N, Starren J, Harris PA, Smith JW, Barbour E, Silverstein JC, Krusch DA, Nagarajan R, Becich MJ, CTSA Biomedical Informatics Key Function Committee Acad Med. 2009 Jul;84(7):964-70 Unintended consequences of health information technology: A need for biomedical informatics. Bernstam EV, Hersh WR, Sim I, Eichmann D, Silverstein JC, Smith JW, Becich MJ J Biomed Inform. 2009 Jun 7; Provider management of and satisfaction with laboratory testing in the nursing home setting: results of a national internet-based survey. Shirts BH, Perera S, Hanlon JT, Roumani YF, Studenski SA, Nace DA, Becich MJ, Handler SM J Am Med Dir Assoc. 2009 Mar;10(3):161-166.e3 Assessing the performance characteristics of signals used by a clinical event monitor to detect adverse drug reactions in the nursing home. Handler SM, Hanlon JT, Perera S, Saul MI, Fridsma DB, Visweswaran S, Studenski SA, Roumani YF, Castle NG, Nace DA, Becich MJ AMIA Annu Symp Proc. 2008 Nov 6;:278-82 Towards a data sharing culture: recommendations for leadership from academic health centers. Piwowar HA, Becich MJ, Bilofsky H, Crowley RS, caBIG Data Sharing and Intellectual Capital Workspace PLoS Med. 2008 Sep 30;5(9):e183 National Mesothelioma Virtual Bank: a standard based biospecimen and clinical data resource to enhance translational research. Amin W, Parwani AV, Schmandt L, Mohanty SK, Farhat G, Pople AK, Winters SB, Whelan NB, Schneider AM, Milnes JT, Valdivieso FA, Feldman M, Pass HI, Dhir R, Melamed J, Becich MJ BMC Cancer. 2008 Aug 13;8:236 A multidisciplinary approach to honest broker services for tissue banks and clinical data: a pragmatic and practical model. Dhir R, Patel AA, Winters S, Bisceglia M, Swanson D, Aamodt R, Becich MJ Cancer. 2008 Oct 1;113(7):1705-15 Frequency of laboratory monitoring of chronic medications administered to nursing facility residents: results of a national Internet-based study. Handler SM, Shirts BH, Perera S, Becich MJ, Castle NG, Hanlon JT Consult Pharm. 2008 May;23(5):387-95 The development and deployment of Common Data Elements for tissue banks for translational research in cancer - an emerging standard based approach for the Mesothelioma Virtual Tissue Bank. Mohanty SK, Mistry AT, Amin W, Parwani AV, Pople AK, Schmandt L, Winters SB, Milliken E, Kim P, Whelan NB, Farhat G, Melamed J, Taioli E, Dhir R, Pass HI, Becich MJ BMC Cancer. 2008 Apr 8;8:91 Development of an instrument for measuring clinicians' power perceptions in the workplace. Bartos CE, Fridsma DB, Butler BS, Penrod LE, Becich MJ, Crowley RS J Biomed Inform. 2008 Dec;41(6):1041-9 Inflammatory markers at hospital discharge predict subsequent mortality after pneumonia and sepsis. Yende S, D'Angelo G, Kellum JA, Weissfeld L, Fine J, Welch RD, Kong L, Carter M, Angus DC, GenIMS Investigators Am J Respir Crit Care Med. 2008 Jun 1;177(11):1242-7 Prevalence of incidental prostate cancer in the general population: a study of healthy organ donors. Yin M, Bastacky S, Chandran U, Becich MJ, Dhir R J Urol. 2008 Mar;179(3):892-5; discussion 895 The importance of pathology informatics in translational research. Mohanty SK, Parwani AV, Crowley RS, Winters S, Becich MJ Adv Anat Pathol. 2007 Sep;14(5):320-2 Synoptic tool for reporting of hematological and lymphoid neoplasms based on World Health Organization classification and College of American Pathologists checklist. Mohanty SK, Piccoli AL, Devine LJ, Patel AA, William GC, Winters SB, Becich MJ, Parwani AV BMC Cancer. 2007 Jul 31;7:144 A system for sharing routine surgical pathology specimens across institutions: the Shared Pathology Informatics Network. Drake TA, Braun J, Marchevsky A, Kohane IS, Fletcher C, Chueh H, Beckwith B, Berkowicz D, Kuo F, Zeng QT, Balis U, Holzbach A, McMurry A, Gee CE, McDonald CJ, Schadow G, Davis M, Hattab EM, Blevins L, Hook J, Becich M, Crowley RS, Taube SE, Berman J, Shared Pathology Informatics Network Hum Pathol. 2007 Aug;38(8):1212-25 Gene expression profiles of prostate cancer reveal involvement of multiple molecular pathways in the metastatic process. Chandran UR, Ma C, Dhir R, Bisceglia M, Lyons-Weiler M, Liang W, Michalopoulos G, Becich M, Monzon FA BMC Cancer. 2007 Apr 12;7:64 Availability and quality of paraffin blocks identified in pathology archives: a multi-institutional study by the Shared Pathology Informatics Network (SPIN). Patel AA, Gupta D, Seligson D, Hattab EM, Balis UJ, Ulbright TM, Kohane IS, Berman JJ, Gilbertson JR, Dry S, Schirripa O, Yu H, Becich MJ, Parwani AV, Shared Pathology Informatics Network BMC Cancer. 2007 Feb 28;7:37 A Novel Cross-Disciplinary Multi-Institute Approach to Translational Cancer Research: Lessons Learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC). Patel AA, Gilbertson JR, Showe LC, London JW, Ross E, Ochs MF, Carver J, Lazarus A, Parwani AV, Dhir R, Beck JR, Liebman M, Garcia FU, Prichard J, Wilkerson M, Herberman RB, Becich MJ, the PCABC Cancer Inform. 2007 Jun 8;3:255-274 An informatics model for tissue banks--lessons learned from the Cooperative Prostate Cancer Tissue Resource. Patel AA, Gilbertson JR, Parwani AV, Dhir R, Datta MW, Gupta R, Berman JJ, Melamed J, Kajdacsy-Balla A, Orenstein J, Becich MJ, Cooperative Prostate Cancer Tissue Resource BMC Cancer. 2006 May 5;6:120 In vitro transcription amplification and labeling methods contribute to the variability of gene expression profiling with DNA microarrays. Ma C, Lyons-Weiler M, Liang W, LaFramboise W, Gilbertson JR, Becich MJ, Monzon FA J Mol Diagn. 2006 May;8(2):183-92 Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression. Varambally S, Yu J, Laxman B, Rhodes DR, Mehra R, Tomlins SA, Shah RB, Chandran U, Monzon FA, Becich MJ, Wei JT, Pienta KJ, Ghosh D, Rubin MA, Chinnaiyan AM Cancer Cell. 2005 Nov;8(5):393-406 Database construction for improving patient safety by examining pathology errors. Grzybicki DM, Turcsanyi B, Becich MJ, Gupta D, Gilbertson JR, Raab SS Am J Clin Pathol. 2005 Oct;124(4):500-9 The development of common data elements for a multi-institute prostate cancer tissue bank: the Cooperative Prostate Cancer Tissue Resource (CPCTR) experience. Patel AA, Kajdacsy-Balla A, Berman JJ, Bosland M, Datta MW, Dhir R, Gilbertson J, Melamed J, Orenstein J, Tai KF, Becich MJ BMC Cancer. 2005 Aug 21;5:108 Differences in gene expression in prostate cancer, normal appearing prostate tissue adjacent to cancer and prostate tissue from cancer free organ donors. Chandran UR, Dhir R, Ma C, Michalopoulos G, Becich M, Gilbertson J BMC Cancer. 2005 May 13;5:45 Prostate cancer in patients with screening serum prostate specific antigen values less than 4.0 ng/dl: results from the cooperative prostate cancer tissue resource. Datta MW, Dhir R, Dobbin K, Bosland MC, Melamed J, Becich MJ, Orenstein JM, Kajdacsy-Balla AA, Patel A, Macias V, Berman JJ J Urol. 2005 May;173(5):1546-51 Perineural invasion in prostate cancer biopsies is not associated with higher rates of positive surgical margins. Cannon GM Jr, Pound CR, Landsittel DP, Bastacky SI, Dhir R, Becich MJ, Nelson JB Prostate. 2005 Jun 1;63(4):336-40 Pathology and patient safety: the critical role of pathology informatics in error reduction and quality initiatives. Becich MJ, Gilbertson JR, Gupta D, Patel A, Grzybicki DM, Raab SS Clin Lab Med. 2004 Dec;24(4):913-43, vi Implementation and evaluation of a negation tagger in a pipeline-based system for information extract from pathology reports. Mitchell KJ, Becich MJ, Berman JJ, Chapman WW, Gilbertson J, Gupta D, Harrison J, Legowski E, Crowley RS Stud Health Technol Inform. 2004;107(Pt 1):663-7 Automated clinical annotation of tissue bank specimens. Gilbertson JR, Gupta R, Nie Y, Patel AA, Becich MJ Stud Health Technol Inform. 2004;107(Pt 1):607-10 Tests for finding complex patterns of differential expression in cancers: towards individualized medicine. Lyons-Weiler J, Patel S, Becich MJ, Godfrey TE BMC Bioinformatics. 2004 Aug 12;5:110 The cooperative prostate cancer tissue resource: a specimen and data resource for cancer researchers. Melamed J, Datta MW, Becich MJ, Orenstein JM, Dhir R, Silver S, Fidélia-Lambert M, Kadjacsy-Balla A, Macias V, Patel A, Walden PD, Bosland MC, Berman JJ Clin Cancer Res. 2004 Jul 15;10(14):4614-21 Webcasting pathology department conferences in a geographically distributed medical center. Yagi Y, Ahmed I, Gross W, Becich MJ, Demetris AJ, Wells A, Wiley CA, Michalopoulos GK, Yousem SA, Barnes B, Gilbertson JR Hum Pathol. 2004 Jul;35(7):790-7 Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy. Yu YP, Landsittel D, Jing L, Nelson J, Ren B, Liu L, McDonald C, Thomas R, Dhir R, Finkelstein S, Michalopoulos G, Becich M, Luo JH J Clin Oncol. 2004 Jul 15;22(14):2790-9 The tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource. Berman JJ, Datta M, Kajdacsy-Balla A, Melamed J, Orenstein J, Dobbin K, Patel A, Dhir R, Becich MJ BMC Bioinformatics. 2004 Feb 27;5:19 Design and analysis of a content-based pathology image retrieval system. Zheng L, Wetzel AW, Gilbertson J, Becich MJ IEEE Trans Inf Technol Biomed. 2003 Dec;7(4):249-55 Expression of inducible nitric oxide synthase in paired neoplastic and non-neoplastic primary prostate cell cultures and prostatectomy specimen. Wang J, Torbenson M, Wang Q, Ro JY, Becich M Urol Oncol. 2003 Mar-Apr;21(2):117-22 High prevalence of screening-detected prostate cancer among Afro-Caribbeans: the Tobago Prostate Cancer Survey. Bunker CH, Patrick AL, Konety BR, Dhir R, Brufsky AM, Vivas CA, Becich MJ, Trump DL, Kuller LH Cancer Epidemiol Biomarkers Prev. 2002 Aug;11(8):726-9 Gene expression analysis of prostate cancers. Luo JH, Yu YP, Cieply K, Lin F, Deflavia P, Dhir R, Finkelstein S, Michalopoulos G, Becich M Mol Carcinog. 2002 Jan;33(1):25-35 |
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